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Calcium in PDB 9f1w: Sfx Room Temperature Structure of Oscillatoria Acuminata Adenylyate Cyclase.

Protein crystallography data

The structure of Sfx Room Temperature Structure of Oscillatoria Acuminata Adenylyate Cyclase., PDB code: 9f1w was solved by S.Kapetanaki, N.Coquelle, M.Weik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.53 / 1.75
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 102.9, 54.91, 72.98, 90, 90, 90
R / Rfree (%) 19.4 / 21.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Sfx Room Temperature Structure of Oscillatoria Acuminata Adenylyate Cyclase. (pdb code 9f1w). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Sfx Room Temperature Structure of Oscillatoria Acuminata Adenylyate Cyclase., PDB code: 9f1w:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 9f1w

Go back to Calcium Binding Sites List in 9f1w
Calcium binding site 1 out of 2 in the Sfx Room Temperature Structure of Oscillatoria Acuminata Adenylyate Cyclase.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Sfx Room Temperature Structure of Oscillatoria Acuminata Adenylyate Cyclase. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca402

b:33.9
occ:1.00
O A:HOH571 2.3 37.9 1.0
OD1 A:ASP321 2.4 34.1 1.0
OD2 A:ASP310 2.4 35.9 1.0
O A:HOH600 2.5 40.0 1.0
OD1 A:ASP310 2.5 33.0 1.0
CG A:ASP310 2.8 31.4 1.0
CG A:ASP321 3.3 38.4 1.0
OD2 A:ASP321 3.7 43.2 1.0
CB A:ASP310 4.3 31.8 1.0
CB A:ASP321 4.6 30.9 1.0
O A:HOH533 4.6 33.5 1.0
NE1 A:TRP307 4.8 32.8 1.0
CA A:ASP321 4.8 30.2 1.0
N A:ASP321 4.8 31.4 1.0

Calcium binding site 2 out of 2 in 9f1w

Go back to Calcium Binding Sites List in 9f1w
Calcium binding site 2 out of 2 in the Sfx Room Temperature Structure of Oscillatoria Acuminata Adenylyate Cyclase.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Sfx Room Temperature Structure of Oscillatoria Acuminata Adenylyate Cyclase. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:52.9
occ:1.00
OD2 A:ASP156 2.2 35.4 0.3
O A:HOH525 2.4 40.2 1.0
OD2 A:ASP200 2.4 35.6 1.0
OD1 A:ASP156 2.5 42.9 0.3
O A:HOH523 2.6 36.2 1.0
CG A:ASP156 2.7 35.7 0.3
OD1 A:ASP200 2.9 35.5 1.0
CG A:ASP200 3.0 40.9 1.0
O A:HOH547 3.2 48.5 1.0
OD2 A:ASP156 3.4 37.5 0.7
O A:ILE157 3.7 35.6 1.0
OE1 A:GLU279 3.8 31.7 0.7
CB A:ASP156 4.0 36.4 0.7
CG A:ASP156 4.1 29.5 0.7
CB A:ASP156 4.1 37.0 0.3
NH2 A:ARG283 4.2 48.8 1.0
OE2 A:GLU279 4.2 35.4 0.7
CD A:GLU279 4.3 41.8 0.7
N A:ILE157 4.5 28.4 1.0
CB A:ASP200 4.5 35.8 1.0
C A:ILE157 4.7 34.9 1.0
CB A:PHE160 4.7 37.4 1.0
O A:HOH544 4.9 38.3 1.0
CA A:ASP156 5.0 30.3 0.3
CA A:ASP156 5.0 30.1 0.7

Reference:

S.Kapetanaki, N.Coquelle, M.Weik. Sfx Room Temperature Structure of Oscillatoria Acuminata Adenylyate Cyclase. To Be Published.
Page generated: Thu Jul 10 09:37:24 2025

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