Atomistry » Calcium » PDB 9ezl-9fzc » 9f1y
Atomistry »
  Calcium »
    PDB 9ezl-9fzc »
      9f1y »

Calcium in PDB 9f1y: Crystal Structure of Oscillatoria Acuminata Adenylyate Cyclase at 100K

Protein crystallography data

The structure of Crystal Structure of Oscillatoria Acuminata Adenylyate Cyclase at 100K, PDB code: 9f1y was solved by S.Kapetanaki, N.Coquelle, M.Weik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.27 / 1.95
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 101.284, 53.455, 71.84, 90, 90, 90
R / Rfree (%) 19.8 / 22.7

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Oscillatoria Acuminata Adenylyate Cyclase at 100K (pdb code 9f1y). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Oscillatoria Acuminata Adenylyate Cyclase at 100K, PDB code: 9f1y:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 9f1y

Go back to Calcium Binding Sites List in 9f1y
Calcium binding site 1 out of 2 in the Crystal Structure of Oscillatoria Acuminata Adenylyate Cyclase at 100K


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Oscillatoria Acuminata Adenylyate Cyclase at 100K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca402

b:26.9
occ:1.00
O A:HOH606 2.3 25.7 1.0
OD2 A:ASP310 2.3 31.1 1.0
OD1 A:ASP321 2.4 27.9 1.0
O A:HOH648 2.4 31.5 1.0
OD1 A:ASP310 2.5 26.0 1.0
CG A:ASP310 2.8 29.7 1.0
CG A:ASP321 3.4 34.2 1.0
OD2 A:ASP321 3.9 29.3 1.0
CB A:ASP310 4.2 28.2 1.0
O A:HOH656 4.5 45.4 1.0
CB A:ASP321 4.6 28.1 1.0
O A:HOH513 4.6 26.8 1.0
N A:ASP321 4.6 25.7 1.0
CA A:ASP321 4.6 24.6 1.0
NE1 A:TRP307 4.6 25.7 1.0
O A:SER319 4.8 30.2 1.0
C A:ILE320 4.9 34.2 1.0
OG A:SER319 4.9 30.4 1.0

Calcium binding site 2 out of 2 in 9f1y

Go back to Calcium Binding Sites List in 9f1y
Calcium binding site 2 out of 2 in the Crystal Structure of Oscillatoria Acuminata Adenylyate Cyclase at 100K


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Oscillatoria Acuminata Adenylyate Cyclase at 100K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:45.1
occ:1.00
O A:HOH532 2.3 33.9 1.0
OD2 A:ASP200 2.4 30.1 1.0
OD2 A:ASP156 2.4 41.5 1.0
O A:HOH521 2.8 33.7 1.0
OD1 A:ASP200 3.1 27.7 1.0
CG A:ASP200 3.1 30.7 1.0
O A:HOH632 3.1 38.1 1.0
CG A:ASP156 3.4 31.5 1.0
O A:ILE157 3.4 27.5 1.0
CB A:ASP156 3.7 27.3 1.0
OE1 A:GLU279 3.9 42.9 1.0
N A:ILE157 4.1 26.6 1.0
OE2 A:GLU279 4.2 35.4 1.0
NH2 A:ARG283 4.3 48.6 1.0
CD A:GLU279 4.4 43.8 1.0
CB A:PHE160 4.4 30.3 1.0
C A:ILE157 4.4 26.4 1.0
OD1 A:ASP156 4.5 38.5 1.0
CB A:ASP200 4.6 26.5 1.0
CA A:ASP156 4.8 24.3 1.0
C A:ASP156 4.8 31.3 1.0
CA A:ILE157 4.8 25.3 1.0
NH1 A:ARG283 4.9 57.7 1.0

Reference:

S.Kapetanaki, N.Coquelle, M.Weik. Ssx Room Temperature Structure of Oscillatoria Acuminata Adenylyate Cyclase. To Be Published.
Page generated: Thu Jul 10 09:37:45 2025

Last articles

Cl in 5HZX
Cl in 5I0R
Cl in 5I02
Cl in 5I00
Cl in 5HZ5
Cl in 5HZ8
Cl in 5HZD
Cl in 5HZ6
Cl in 5HY5
Cl in 5HXZ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy