Atomistry » Calcium » PDB 9ezl-9fzc » 9fyz
Atomistry »
  Calcium »
    PDB 9ezl-9fzc »
      9fyz »

Calcium in PDB 9fyz: Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe

Enzymatic activity of Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe

All present enzymatic activity of Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe:
3.2.1.135;

Protein crystallography data

The structure of Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe, PDB code: 9fyz was solved by I.B.Pickles, O.Moroz, G.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 58.25 / 2.43
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 105.978, 105.978, 753.691, 90, 90, 120
R / Rfree (%) 23 / 28.1

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Calcium atom in the Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe (pdb code 9fyz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 12 binding sites of Calcium where determined in the Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe, PDB code: 9fyz:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 12 in 9fyz

Go back to Calcium Binding Sites List in 9fyz
Calcium binding site 1 out of 12 in the Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca706

b:58.8
occ:1.00
OD2 A:ASP166 2.3 40.9 1.0
OD1 A:ASN138 2.3 47.8 1.0
OD1 A:ASP144 2.3 43.5 1.0
O A:HOH855 2.4 39.1 1.0
O A:GLY164 2.5 43.2 1.0
O A:ASN140 2.6 53.5 1.0
OD1 A:ASN143 2.6 70.8 1.0
CG A:ASN138 3.1 49.0 1.0
CG A:ASP166 3.4 41.8 1.0
C A:ASN140 3.4 56.7 1.0
ND2 A:ASN138 3.5 46.0 1.0
CG A:ASP144 3.5 41.8 1.0
C A:GLY164 3.6 38.9 1.0
CG A:ASN143 3.8 63.5 1.0
CB A:ASP166 3.8 43.2 1.0
N A:ASP144 4.0 44.6 1.0
CA A:PRO141 4.0 71.0 1.0
N A:PRO141 4.1 68.0 1.0
CA A:GLY164 4.2 33.4 1.0
N A:ASN140 4.2 53.8 1.0
OD2 A:ASP144 4.3 50.9 1.0
CB A:ASN138 4.3 47.5 1.0
CA A:ASP144 4.3 43.5 1.0
CA A:ASN140 4.3 58.9 1.0
ND2 A:ASN143 4.4 64.4 1.0
O A:ARG214 4.4 41.6 1.0
O A:GLY165 4.4 44.4 1.0
C A:GLY165 4.4 33.8 1.0
OD1 A:ASP166 4.4 45.8 1.0
CA A:ASN138 4.5 46.9 1.0
CB A:ASP144 4.5 36.1 1.0
C A:ASN143 4.5 52.5 1.0
C A:PRO141 4.6 60.4 1.0
N A:GLY165 4.7 41.1 1.0
N A:ASP166 4.7 36.1 1.0
N A:ASN143 4.8 64.8 1.0
O A:PRO141 4.8 69.7 1.0
N A:GLY139 4.8 41.1 1.0
CB A:ASN140 4.8 62.0 1.0
CA A:GLY165 4.9 35.8 1.0
CA A:ASP166 4.9 35.3 1.0
C A:ASN138 4.9 46.0 1.0
CA A:ASN143 5.0 56.4 1.0
CB A:ASN143 5.0 59.4 1.0

Calcium binding site 2 out of 12 in 9fyz

Go back to Calcium Binding Sites List in 9fyz
Calcium binding site 2 out of 12 in the Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca707

b:43.2
occ:1.00
OD2 A:ASP300 2.3 39.7 1.0
O A:HOH934 2.3 39.6 1.0
O A:ILE290 2.4 49.6 1.0
OD1 A:ASN242 2.4 39.8 1.0
O A:TYR335 2.4 42.2 1.0
O A:HOH848 2.6 39.4 1.0
O A:HOH821 2.6 36.2 1.0
OD1 A:ASP300 2.7 39.0 1.0
CG A:ASP300 2.8 42.3 1.0
CG A:ASN242 3.4 41.0 1.0
C A:TYR335 3.5 34.1 1.0
C A:ILE290 3.5 50.3 1.0
ND2 A:ASN242 3.9 47.5 1.0
CB A:ASP300 4.3 46.0 1.0
CB A:TYR335 4.3 35.1 1.0
CA A:ALA336 4.3 44.4 1.0
N A:ALA336 4.4 39.2 1.0
CA A:ILE290 4.4 50.3 1.0
ND2 A:ASN261 4.4 33.0 1.0
O A:GLY292 4.4 49.6 1.0
O A:ASN242 4.4 35.0 1.0
N A:ASP291 4.5 46.4 1.0
CA A:TYR335 4.5 43.1 1.0
O A:PHE301 4.5 45.1 1.0
CA A:ASP291 4.5 47.7 1.0
CB A:ASN242 4.7 38.5 1.0
CG2 A:ILE290 4.7 36.0 1.0
OE1 A:GLN303 4.7 48.5 1.0
NE2 A:GLN303 4.8 50.2 1.0
C A:ASP291 4.8 54.5 1.0
CA A:ASN242 4.9 36.5 1.0

Calcium binding site 3 out of 12 in 9fyz

Go back to Calcium Binding Sites List in 9fyz
Calcium binding site 3 out of 12 in the Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca704

b:73.3
occ:1.00
O B:HOH844 2.3 56.6 1.0
OD1 B:ASP144 2.3 71.3 1.0
OD2 B:ASP166 2.4 72.6 1.0
O B:GLY164 2.4 47.2 1.0
OD1 B:ASN138 2.4 58.8 1.0
OD1 B:ASN143 2.7 79.1 1.0
O B:ASN140 2.7 77.0 1.0
CG B:ASN138 3.1 62.5 1.0
CG B:ASP166 3.4 65.2 1.0
C B:GLY164 3.5 56.3 1.0
ND2 B:ASN138 3.5 46.0 1.0
CG B:ASP144 3.5 57.5 1.0
C B:ASN140 3.6 74.1 1.0
CB B:ASP166 3.8 53.9 1.0
CG B:ASN143 3.9 74.4 1.0
N B:ASP144 4.0 53.5 1.0
CA B:GLY164 4.1 55.5 1.0
CA B:PRO141 4.1 71.7 1.0
N B:PRO141 4.2 81.9 1.0
OD2 B:ASP144 4.3 60.8 1.0
CA B:ASP144 4.3 57.0 1.0
CB B:ASN138 4.3 58.7 1.0
N B:ASN140 4.3 69.8 1.0
O B:GLY165 4.3 55.9 1.0
C B:GLY165 4.4 50.1 1.0
O B:ARG214 4.4 68.4 1.0
CA B:ASN138 4.5 59.3 1.0
CB B:ASP144 4.5 60.0 1.0
OD1 B:ASP166 4.5 78.0 1.0
CA B:ASN140 4.5 70.5 1.0
ND2 B:ASN143 4.5 64.6 1.0
C B:ASN143 4.5 54.9 1.0
N B:GLY165 4.5 55.7 1.0
N B:ASP166 4.6 46.5 1.0
C B:PRO141 4.6 66.4 1.0
CA B:GLY165 4.8 50.8 1.0
CA B:ASP166 4.8 50.4 1.0
N B:ASN143 4.9 67.6 1.0
O B:PRO141 4.9 65.8 1.0
N B:GLY139 4.9 54.1 1.0
C B:ASN138 4.9 56.9 1.0
CB B:ASN140 5.0 65.3 1.0

Calcium binding site 4 out of 12 in 9fyz

Go back to Calcium Binding Sites List in 9fyz
Calcium binding site 4 out of 12 in the Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca705

b:93.9
occ:1.00
O B:HOH821 2.7 52.3 1.0
O B:TYR335 3.0 68.2 1.0
O B:HOH874 3.4 75.8 1.0
OD2 B:ASP300 3.7 83.1 1.0
CD2 B:TYR335 3.7 93.6 1.0
C B:TYR335 4.0 71.2 1.0
CB B:ASN242 4.1 51.1 1.0
CG B:ASP300 4.2 67.6 1.0
O B:ILE290 4.2 86.1 1.0
OE1 B:GLN303 4.3 82.8 1.0
CB B:TYR335 4.4 85.4 1.0
CG B:TYR335 4.5 94.9 1.0
CE2 B:TYR335 4.5 75.3 1.0
OD1 B:ASP300 4.5 80.6 1.0
NE2 B:GLN303 4.6 97.6 1.0
O B:ASN242 4.7 47.0 1.0
CA B:ASN242 4.7 46.8 1.0
CA B:ALA336 4.8 79.5 1.0
N B:ALA336 4.8 72.6 1.0
CA B:TYR335 4.8 82.9 1.0
CB B:ASP300 4.9 60.2 1.0
O B:PHE301 4.9 49.3 1.0
CD B:GLN303 4.9 75.4 1.0

Calcium binding site 5 out of 12 in 9fyz

Go back to Calcium Binding Sites List in 9fyz
Calcium binding site 5 out of 12 in the Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca706

b:102.7
occ:1.00
OD2 C:ASP166 2.3 103.4 1.0
O C:GLY164 2.3 83.1 1.0
OD1 C:ASP144 2.4 100.4 1.0
OD1 C:ASN138 2.5 75.8 1.0
OD1 C:ASN143 2.6 107.0 1.0
O C:ASN140 2.7 65.0 1.0
CG C:ASN138 3.2 79.5 1.0
CG C:ASP166 3.3 84.3 1.0
C C:GLY164 3.4 87.0 1.0
ND2 C:ASN138 3.5 78.5 1.0
CG C:ASP144 3.6 86.8 1.0
C C:ASN140 3.6 89.5 1.0
CB C:ASP166 3.7 82.3 1.0
CG C:ASN143 3.8 117.7 1.0
CA C:GLY164 4.1 78.5 1.0
N C:ASP144 4.1 85.4 1.0
CA C:PRO141 4.2 84.4 1.0
N C:PRO141 4.2 93.7 1.0
O C:GLY165 4.3 83.2 1.0
C C:GLY165 4.3 73.7 1.0
CB C:ASN138 4.3 72.3 1.0
OD2 C:ASP144 4.3 100.3 1.0
CA C:ASP144 4.3 88.0 1.0
N C:ASN140 4.3 77.1 1.0
O C:ARG214 4.4 112.5 1.0
ND2 C:ASN143 4.4 123.5 1.0
OD1 C:ASP166 4.4 88.1 1.0
CA C:ASN138 4.5 78.8 1.0
CA C:ASN140 4.5 88.2 1.0
N C:GLY165 4.5 77.9 1.0
CB C:ASP144 4.5 86.2 1.0
N C:ASP166 4.5 68.4 1.0
C C:ASN143 4.5 89.2 1.0
C C:PRO141 4.7 72.6 1.0
CA C:GLY165 4.7 80.5 1.0
CA C:ASP166 4.8 84.5 1.0
N C:ASN143 4.9 97.0 1.0
N C:GLY139 4.9 68.2 1.0
O C:PRO141 4.9 87.2 1.0
CB C:ASN140 5.0 98.4 1.0
C C:ASN138 5.0 63.6 1.0

Calcium binding site 6 out of 12 in 9fyz

Go back to Calcium Binding Sites List in 9fyz
Calcium binding site 6 out of 12 in the Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca707

b:135.1
occ:1.00
O C:ILE290 2.5 149.8 1.0
OD1 C:ASN242 2.6 108.1 1.0
O C:TYR335 2.9 116.9 1.0
CG C:ASN242 3.6 88.5 1.0
C C:ILE290 3.7 136.8 1.0
O C:PHE301 3.8 97.8 1.0
ND2 C:ASN261 4.0 111.3 1.0
C C:TYR335 4.0 106.8 1.0
O C:ASN242 4.0 81.1 1.0
CB C:ASP300 4.0 78.2 1.0
OE1 C:GLN303 4.0 81.8 1.0
NE2 C:GLN303 4.1 86.9 1.0
ND2 C:ASN242 4.1 105.6 1.0
CA C:ALA336 4.4 92.0 1.0
CD C:GLN303 4.5 83.9 1.0
CA C:ASP291 4.6 111.9 1.0
N C:ASP291 4.6 112.9 1.0
CA C:ILE290 4.6 126.7 1.0
N C:ALA336 4.6 95.0 1.0
CA C:ASN242 4.6 70.2 1.0
CB C:ASN242 4.6 75.1 1.0
C C:ASN242 4.7 76.3 1.0
CA C:ASP300 4.7 87.7 1.0
O C:GLY292 4.8 112.6 1.0
CB C:TYR335 4.9 92.4 1.0
N C:PHE301 4.9 100.0 1.0
C C:PHE301 4.9 93.5 1.0
C C:ASP300 4.9 97.5 1.0
CG2 C:ILE290 5.0 90.9 1.0
C C:ASP291 5.0 110.0 1.0

Calcium binding site 7 out of 12 in 9fyz

Go back to Calcium Binding Sites List in 9fyz
Calcium binding site 7 out of 12 in the Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca706

b:106.0
occ:1.00
OD1 D:ASP144 2.3 97.2 1.0
OD1 D:ASN143 2.4 124.2 1.0
OD2 D:ASP166 2.5 108.3 1.0
O D:GLY164 2.5 104.4 1.0
OD1 D:ASN138 2.6 78.1 1.0
O D:ASN140 2.7 97.7 1.0
CG D:ASN138 3.3 86.0 1.0
CG D:ASP166 3.5 107.1 1.0
CG D:ASP144 3.5 85.0 1.0
C D:ASN140 3.6 101.5 1.0
C D:GLY164 3.6 100.7 1.0
CG D:ASN143 3.6 124.2 1.0
ND2 D:ASN138 3.7 68.7 1.0
CB D:ASP166 3.8 100.6 1.0
N D:ASP144 3.9 97.3 1.0
CA D:GLY164 4.1 92.3 1.0
CA D:PRO141 4.1 76.5 1.0
CA D:ASP144 4.2 76.6 1.0
O D:ARG214 4.2 93.9 1.0
N D:PRO141 4.2 88.1 1.0
ND2 D:ASN143 4.3 113.2 1.0
C D:ASN143 4.3 121.1 1.0
OD2 D:ASP144 4.3 95.2 1.0
O D:GLY165 4.4 69.9 1.0
CB D:ASP144 4.4 80.2 1.0
N D:ASN140 4.4 78.1 1.0
C D:GLY165 4.4 81.8 1.0
CA D:ASN140 4.5 84.2 1.0
CB D:ASN138 4.5 83.7 1.0
C D:PRO141 4.6 81.3 1.0
OD1 D:ASP166 4.6 80.0 1.0
N D:GLY165 4.7 98.7 1.0
N D:ASN143 4.7 118.0 1.0
CA D:ASN138 4.7 91.1 1.0
N D:ASP166 4.7 87.2 1.0
CA D:ASN143 4.8 128.0 1.0
O D:PRO141 4.8 72.7 1.0
CB D:ASN143 4.8 128.1 1.0
O D:ASN143 4.8 121.1 1.0
CA D:ASP166 4.9 93.3 1.0
CA D:GLY165 4.9 92.5 1.0
CB D:ASN140 5.0 95.7 1.0

Calcium binding site 8 out of 12 in 9fyz

Go back to Calcium Binding Sites List in 9fyz
Calcium binding site 8 out of 12 in the Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca707

b:75.6
occ:1.00
OD1 D:ASN242 2.3 76.4 1.0
OD2 D:ASP300 2.3 56.5 1.0
O D:ILE290 2.4 83.5 1.0
O D:TYR335 2.4 66.5 1.0
O D:HOH811 2.5 63.6 1.0
O D:HOH817 2.6 70.7 1.0
OD1 D:ASP300 2.7 64.3 1.0
CG D:ASP300 2.8 74.7 1.0
CG D:ASN242 3.4 82.2 1.0
C D:TYR335 3.5 62.9 1.0
C D:ILE290 3.6 74.5 1.0
ND2 D:ASN242 3.9 80.0 1.0
CB D:TYR335 4.2 59.7 1.0
CB D:ASP300 4.3 64.7 1.0
CA D:ALA336 4.3 69.9 1.0
N D:ALA336 4.3 70.3 1.0
CA D:ILE290 4.4 81.7 1.0
O D:ASN242 4.4 66.7 1.0
ND2 D:ASN261 4.4 48.2 1.0
O D:GLY292 4.4 69.8 1.0
CA D:TYR335 4.5 60.3 1.0
O D:PHE301 4.5 48.0 1.0
N D:ASP291 4.5 59.2 1.0
CB D:ASN242 4.6 81.3 1.0
CA D:ASP291 4.6 55.4 1.0
OE1 D:GLN303 4.6 77.1 1.0
CG2 D:ILE290 4.6 82.7 1.0
NE2 D:GLN303 4.7 89.6 1.0
CA D:ASN242 4.8 75.9 1.0
C D:ASP291 4.9 62.8 1.0

Calcium binding site 9 out of 12 in 9fyz

Go back to Calcium Binding Sites List in 9fyz
Calcium binding site 9 out of 12 in the Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca704

b:77.2
occ:1.00
OD2 E:ASP300 2.4 69.8 1.0
OD1 E:ASN242 2.5 84.2 1.0
O E:TYR335 2.5 64.3 1.0
O E:ILE290 2.5 77.5 1.0
O E:HOH811 2.7 66.4 1.0
OD1 E:ASP300 2.8 70.4 1.0
CG E:ASP300 2.9 63.9 1.0
CG E:ASN242 3.5 88.2 1.0
C E:TYR335 3.6 69.4 1.0
C E:ILE290 3.7 67.6 1.0
CA E:ALA336 4.1 79.9 1.0
ND2 E:ASN242 4.1 84.2 1.0
O E:PHE301 4.1 67.2 1.0
OE1 E:GLN303 4.2 66.0 1.0
ND2 E:ASN261 4.2 74.2 1.0
N E:ALA336 4.3 78.6 1.0
O E:ASN242 4.3 57.7 1.0
NE2 E:GLN303 4.3 76.2 1.0
CB E:ASP300 4.3 66.8 1.0
CB E:TYR335 4.6 66.7 1.0
CA E:ILE290 4.6 76.2 1.0
CG2 E:ILE290 4.6 77.2 1.0
CB E:ASN242 4.6 90.2 1.0
N E:ASP291 4.6 69.5 1.0
CD E:GLN303 4.7 66.6 1.0
CA E:TYR335 4.7 66.7 1.0
CA E:ASP291 4.7 61.5 1.0
CA E:ASN242 4.7 75.1 1.0
O E:GLY292 4.8 75.3 1.0
CB E:ALA336 4.9 86.2 1.0
C E:ASN242 4.9 67.7 1.0

Calcium binding site 10 out of 12 in 9fyz

Go back to Calcium Binding Sites List in 9fyz
Calcium binding site 10 out of 12 in the Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Crystal Structure of Susa Amylase From Bacteroides Thetaiotaomicron Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca705

b:131.6
occ:1.00
OD1 E:ASP144 2.3 97.9 1.0
OD2 E:ASP166 2.3 142.8 1.0
O E:ASN140 2.4 137.0 1.0
OD1 E:ASN138 2.4 119.7 1.0
OD1 E:ASN143 2.5 107.9 1.0
O E:GLY164 2.7 100.2 1.0
CG E:ASN138 3.2 102.5 1.0
C E:ASN140 3.2 118.0 1.0
CG E:ASP166 3.4 121.0 1.0
CG E:ASP144 3.5 101.0 1.0
ND2 E:ASN138 3.6 93.7 1.0
CG E:ASN143 3.7 105.7 1.0
C E:GLY164 3.8 113.4 1.0
CA E:PRO141 3.9 113.8 1.0
CB E:ASP166 3.9 100.2 1.0
N E:PRO141 3.9 124.0 1.0
N E:ASP144 4.0 98.3 1.0
N E:ASN140 4.1 108.7 1.0
CA E:ASN140 4.2 111.9 1.0
ND2 E:ASN143 4.3 108.5 1.0
CA E:ASP144 4.3 92.3 1.0
OD2 E:ASP144 4.3 95.7 1.0
CA E:GLY164 4.4 127.8 1.0
C E:PRO141 4.4 109.5 1.0
C E:ASN143 4.4 108.7 1.0
CB E:ASN138 4.4 90.6 1.0
O E:ARG214 4.5 112.0 1.0
OD1 E:ASP166 4.5 128.5 1.0
CB E:ASP144 4.5 92.1 1.0
N E:ASN143 4.6 137.6 1.0
CA E:ASN138 4.6 106.9 1.0
O E:GLY165 4.6 121.4 1.0
C E:GLY165 4.6 98.8 1.0
O E:PRO141 4.7 115.8 1.0
CB E:ASN140 4.7 107.7 1.0
CA E:ASN143 4.8 122.8 1.0
CB E:ASN143 4.8 107.8 1.0
N E:ASP166 4.8 87.4 1.0
N E:GLY165 4.9 101.0 1.0
N E:GLY139 4.9 138.6 1.0
C E:ASN138 5.0 133.1 1.0
N E:SER142 5.0 115.2 1.0

Reference:

I.B.Pickles, Y.Chen, O.Moroz, H.A.Brown, C.De Boer, Z.Armstrong, N.G.S.Mcgregor, M.Artola, J.D.C.Codee, N.M.Koropatkin, H.S.Overkleeft, G.J.Davies. Precision Activity-Based Alpha-Amylase Probes For Dissection and Annotation of Linear and Branched-Chain Starch-Degrading Enzymes. Angew.Chem.Int.Ed.Engl. 15219 2024.
ISSN: ESSN 1521-3773
PubMed: 39601378
DOI: 10.1002/ANIE.202415219
Page generated: Thu Jul 10 09:43:49 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy