Calcium in PDB 8x0m: Cryo-Em Structure of Semliki Forest Virus in Complex with Its Receptor Vldlr(5-Fold)

The binding sites of Calcium atom in the Cryo-Em Structure of Semliki Forest Virus in Complex with Its Receptor Vldlr(5-Fold) (pdb code 8x0m). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryo-Em Structure of Semliki Forest Virus in Complex with Its Receptor Vldlr(5-Fold), PDB code: 8x0m:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryo-Em Structure of Semliki Forest Virus in Complex with Its Receptor Vldlr(5-Fold)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Semliki Forest Virus in Complex with Its Receptor Vldlr(5-Fold) within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca400 b:168.4 occ:1.00 O D:TRP102 2.3 145.0 1.0 OE2 D:GLU116 2.3 169.3 1.0 OD2 D:ASP115 2.3 167.3 1.0 OD1 D:ASP105 2.4 163.8 1.0 OD2 D:ASP109 2.4 162.0 1.0 CG D:ASP105 2.9 163.8 1.0 N D:CYS104 2.9 164.5 1.0 N D:ASP105 3.0 163.8 1.0 CG D:ASP115 3.3 167.3 1.0 O D:GLU107 3.4 164.1 1.0 OD2 D:ASP105 3.4 163.8 1.0 C D:ARG103 3.4 156.7 1.0 C D:TRP102 3.4 145.0 1.0 CD D:GLU116 3.5 169.3 1.0 CA D:ARG103 3.6 156.7 1.0 CB D:ASP115 3.6 167.3 1.0 CG D:ASP109 3.7 162.0 1.0 CA D:CYS104 3.7 164.5 1.0 C D:CYS104 3.8 164.5 1.0 CB D:ASP105 3.8 163.8 1.0 CA D:ASP105 3.9 163.8 1.0 N D:ARG103 3.9 156.7 1.0 CG D:GLU116 4.2 169.3 1.0 O D:ARG103 4.2 156.7 1.0 OD1 D:ASP115 4.3 167.3 1.0 N D:GLY106 4.4 165.8 1.0 OE1 D:GLU116 4.5 169.3 1.0 OD1 D:ASP109 4.5 162.0 1.0 N D:GLU107 4.5 164.1 1.0 C D:GLU107 4.5 164.1 1.0 C D:ASP105 4.5 163.8 1.0 CB D:ASP109 4.6 162.0 1.0 CA D:TRP102 4.7 145.0 1.0 N D:GLU116 4.7 169.3 1.0 C D:ASP115 4.8 167.3 1.0 CA D:ASP115 4.8 167.3 1.0 N D:ASP109 4.9 162.0 1.0 CB D:ARG103 5.0 156.7 1.0

Calcium binding site 2 out of 2 in the Cryo-Em Structure of Semliki Forest Virus in Complex with Its Receptor Vldlr(5-Fold)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of Semliki Forest Virus in Complex with Its Receptor Vldlr(5-Fold) within 5.0Å range: probe atom residue distance (Å) B Occ H:Ca400 b:153.0 occ:1.00 OD2 H:ASP115 2.3 155.1 1.0 OD1 H:ASP105 2.3 151.2 1.0 OD2 H:ASP109 2.3 150.9 1.0 O H:GLU107 2.3 152.5 1.0 O H:TRP102 2.4 138.2 1.0 OE2 H:GLU116 3.1 155.7 1.0 CG H:ASP115 3.2 155.1 1.0 CG H:ASP105 3.2 151.2 1.0 C H:GLU107 3.4 152.5 1.0 CG H:ASP109 3.4 150.9 1.0 C H:TRP102 3.5 138.2 1.0 OD1 H:ASP115 3.5 155.1 1.0 OD2 H:ASP105 3.7 151.2 1.0 N H:ASP109 3.8 150.9 1.0 CB H:TRP102 4.0 138.2 1.0 CB H:ASP109 4.1 150.9 1.0 CD H:GLU116 4.1 155.7 1.0 N H:GLU107 4.2 152.5 1.0 CA H:GLU107 4.2 152.5 1.0 CA H:TRP102 4.2 138.2 1.0 N H:ASN108 4.3 153.0 1.0 CG H:GLU116 4.4 155.7 1.0 CB H:ASP105 4.4 151.2 1.0 OD1 H:ASP109 4.4 150.9 1.0 CB H:ASP115 4.4 155.1 1.0 CA H:ASN108 4.5 153.0 1.0 N H:ASP105 4.5 151.2 1.0 CB H:GLU107 4.5 152.5 1.0 N H:ARG103 4.5 147.7 1.0 CA H:ASP109 4.6 150.9 1.0 C H:ASN108 4.6 153.0 1.0 CA H:ARG103 4.7 147.7 1.0 N H:CYS104 4.8 154.1 1.0 CA H:ASP105 4.9 151.2 1.0

F.G.Gao, S.Liu. Cryo-Em Structure of Semliki Forest Virus in Complex with Its Receptor Vldlr(5-Fold) To Be Published.